Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isocitrate/isopropylmalate dehydrogenase family protein | YT1_RS15745 | Not Available | Negative | 3205440 - 3206534 | 38170.5 |
| 2'-5' rna ligase family protein | YT1_RS15750 | Not Available | Positive | 3206554 - 3207072 | 18849.9 |
| glxa family transcriptional regulator | YT1_RS15755 | Not Available | Positive | 3207311 - 3208318 | 36317.4 |
| thioredoxin | YT1_RS15760 | Not Available | Positive | 3208447 - 3208818 | 13444.8 |
| dna polymerase i | YT1_RS15765 | Not Available | Negative | 3208877 - 3211600 | 98655.5 |
| branched-chain amino acid abc transporter permease | YT1_RS15770 | Not Available | Positive | 3211802 - 3213148 | 46663.7 |
| branched-chain amino acid abc transporter permease | YT1_RS15775 | Not Available | Positive | 3213154 - 3214143 | 35119.7 |
| abc transporter atp-binding protein | YT1_RS15780 | Not Available | Positive | 3214136 - 3215176 | 36942.0 |
| abc transporter atp-binding protein | YT1_RS15785 | Not Available | Positive | 3215182 - 3215997 | 29576.0 |
| abc transporter substrate-binding protein | YT1_RS15790 | Not Available | Negative | 3216051 - 3217376 | 45120.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


