Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsr/smtb family transcription factor | YT1_RS15645 | Not Available | Negative | 3183981 - 3184343 | 12982.9 |
| hypothetical protein | YT1_RS15650 | Not Available | Negative | 3184491 - 3185009 | 18306.9 |
| doxx family protein | YT1_RS15655 | Not Available | Positive | 3185139 - 3186185 | 37399.7 |
| held family protein | YT1_RS15660 | Not Available | Positive | 3186358 - 3188598 | 81706.7 |
| duf732 domain-containing protein | YT1_RS15665 | Not Available | Positive | 3188870 - 3189151 | 9345.14 |
| universal stress protein | YT1_RS15670 | Not Available | Negative | 3189160 - 3189612 | 15640.5 |
| sco6745 family protein | YT1_RS15675 | Not Available | Negative | 3189781 - 3190653 | 30726.3 |
| excinuclease abc subunit uvrb | YT1_RS15680 | Not Available | Negative | 3190664 - 3192817 | 80343.6 |
| duf3267 domain-containing protein | YT1_RS15685 | Not Available | Positive | 3193012 - 3193620 | 21077.7 |
| duf402 domain-containing protein | YT1_RS15690 | Not Available | Positive | 3193670 - 3194182 | 19356.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


