Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ecsc family protein | YT1_RS15465 | Not Available | Positive | 3134000 - 3135034 | 36933.4 |
| helix-turn-helix transcriptional regulator | YT1_RS15470 | Not Available | Positive | 3135131 - 3135322 | 7208.31 |
| duf4062 domain-containing protein | YT1_RS27300 | Not Available | Positive | 3135792 - 3136586 | 30016.9 |
| is3 family transposase | YT1_RS15475 | Not Available | Negative | 3136820 - 3138270 | 53180.2 |
| hypothetical protein | YT1_RS27490 | Not Available | Negative | 3138399 - 3138977 | 20844.7 |
| hypothetical protein | YT1_RS15485 | Not Available | Positive | 3138976 - 3139407 | 15568.7 |
| hypothetical protein | YT1_RS27305 | Not Available | Negative | 3139511 - 3139669 | 6039.32 |
| helix-turn-helix transcriptional regulator | YT1_RS27685 | Not Available | Positive | 3139935 - 3140336 | 14581.4 |
| transposase | YT1_RS27690 | Not Available | Positive | 3140422 - 3140991 | 21070.0 |
| transposase | YT1_RS15495 | Not Available | Positive | 3141215 - 3141448 | 8932.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


