Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta fold hydrolase | YT1_RS15420 | Not Available | Positive | 3120147 - 3120848 | 24262.9 |
| lipase family protein | YT1_RS15425 | Not Available | Negative | 3120858 - 3121997 | 39806.8 |
| excinuclease abc subunit uvra | YT1_RS15430 | Not Available | Negative | 3122049 - 3124982 | 107252.0 |
| mbl fold metallo-hydrolase | YT1_RS15435 | Not Available | Positive | 3125156 - 3125845 | 24688.9 |
| sir2 family protein | YT1_RS15440 | Not Available | Positive | 3125902 - 3127065 | 42339.7 |
| restriction endonuclease | YT1_RS15445 | Not Available | Negative | 3127087 - 3127590 | 18336.1 |
| giy-yig nuclease family protein | YT1_RS15450 | Not Available | Negative | 3127911 - 3128744 | 31021.5 |
| hypothetical protein | YT1_RS15455 | Not Available | Negative | 3129134 - 3130336 | 43271.6 |
| is21-like element helper atpase istb | YT1_RS27480 | Not Available | Negative | 3130854 - 3131618 | 28425.2 |
| is21 family transposase | YT1_RS27485 | Not Available | Negative | 3131685 - 3133226 | 56928.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


