Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna repair protein recn | YT1_RS15275 | Not Available | Negative | 3085450 - 3087237 | 62557.9 |
| nad kinase | YT1_RS15280 | Not Available | Negative | 3087239 - 3088183 | 33494.4 |
| tlya family rna methyltransferase | YT1_RS15285 | Not Available | Negative | 3088180 - 3089004 | 29037.9 |
| hypothetical protein | YT1_RS27295 | Not Available | Negative | 3089006 - 3089173 | 5961.11 |
| had-iia family hydrolase | YT1_RS15290 | Not Available | Negative | 3089283 - 3090272 | 33981.3 |
| tetratricopeptide repeat protein | YT1_RS15295 | Not Available | Negative | 3090269 - 3091474 | 43831.2 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 3091542 - 3091658 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 3091766 - 3094899 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 3095198 - 3096720 | Not Available |
| tyrosine--trna ligase | YT1_RS15315 | Not Available | Negative | 3097182 - 3098459 | 46625.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


