Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf881 domain-containing protein | YT1_RS15170 | Not Available | Negative | 3064473 - 3065339 | 30553.8 |
| cdp-alcohol phosphatidyltransferase family protein | YT1_RS15175 | Not Available | Negative | 3065336 - 3065956 | 21927.5 |
| nudix hydrolase | YT1_RS15180 | Not Available | Negative | 3066028 - 3066645 | 22709.0 |
| aaa family atpase | YT1_RS15185 | Not Available | Positive | 3066776 - 3067714 | 33560.2 |
| vwa domain-containing protein | YT1_RS15190 | Not Available | Positive | 3067739 - 3068707 | 34316.1 |
| srpbcc family protein | YT1_RS15195 | Not Available | Negative | 3069285 - 3069722 | 16162.2 |
| bifunctional acetaldehyde-coa/alcohol dehydrogenase | YT1_RS15200 | Not Available | Negative | 3069712 - 3072372 | 94915.6 |
| nucleotidyltransferase family protein | YT1_RS15210 | Not Available | Negative | 3073160 - 3073465 | 11172.0 |
| Trna-pro | Not Available | Not Available | Positive | 3073835 - 3073908 | Not Available |
| ribosome biogenesis gtpase der | YT1_RS15220 | Not Available | Negative | 3073992 - 3075413 | 51818.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


