Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine-type recombinase/integrase | YT1_RS15025 | Not Available | Positive | 3028469 - 3029500 | 38290.0 |
| nad(p)/fad-dependent oxidoreductase | YT1_RS15030 | Not Available | Positive | 3029637 - 3031016 | 49413.5 |
| paai family thioesterase | YT1_RS15035 | Not Available | Negative | 3031054 - 3031500 | 15979.7 |
| hypothetical protein | YT1_RS15040 | Not Available | Negative | 3031715 - 3032434 | 25985.4 |
| feccd family abc transporter permease | YT1_RS15045 | Not Available | Positive | 3032578 - 3033996 | 48534.2 |
| feccd family abc transporter permease | YT1_RS15050 | Not Available | Positive | 3033993 - 3035090 | 36572.7 |
| abc transporter atp-binding protein | YT1_RS15055 | Not Available | Positive | 3035150 - 3036031 | 31623.2 |
| blai/meci/copy family transcriptional regulator | YT1_RS15060 | Not Available | Positive | 3036041 - 3036463 | 15243.1 |
| m56 family metallopeptidase | YT1_RS15065 | Not Available | Positive | 3036481 - 3037434 | 34287.3 |
| nadp-dependent phosphogluconate dehydrogenase | YT1_RS15070 | Not Available | Positive | 3037505 - 3038956 | 51656.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


