Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ppox class f420-dependent oxidoreductase | YT1_RS14920 | Not Available | Positive | 2987563 - 2987979 | 14634.6 |
| metallopeptidase tldd-related protein | YT1_RS14925 | Not Available | Negative | 2988015 - 2989382 | 48244.8 |
| tldd/pmba family protein | YT1_RS14930 | Not Available | Negative | 2989379 - 2990890 | 54197.4 |
| tsup family transporter | YT1_RS14935 | Not Available | Negative | 2990928 - 2991695 | 26020.8 |
| fxsa family protein | YT1_RS14940 | Not Available | Positive | 2991795 - 2992319 | 17681.0 |
| amidohydrolase | YT1_RS14945 | Not Available | Positive | 2992339 - 2993949 | 55585.2 |
| apolipoprotein n-acyltransferase | YT1_RS14950 | Not Available | Positive | 2993946 - 2995523 | 54264.8 |
| polyprenol monophosphomannose synthase | YT1_RS14955 | Not Available | Positive | 2995559 - 2996338 | 28310.9 |
| hsp20/alpha crystallin family protein | YT1_RS14960 | Not Available | Negative | 2996396 - 2996821 | 15438.1 |
| hypothetical protein | YT1_RS14965 | Not Available | Negative | 2996998 - 2997483 | 17348.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


