Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sec-independent protein translocase subunit tata | YT1_RS14870 | Not Available | Positive | 2976787 - 2977047 | 9309.21 |
| twin-arginine translocase subunit tatc | YT1_RS14875 | Not Available | Positive | 2977134 - 2978081 | 34158.9 |
| dead/deah box helicase | YT1_RS14880 | Not Available | Positive | 2978088 - 2980817 | 98859.2 |
| duf4333 domain-containing protein | YT1_RS14885 | Not Available | Positive | 2980925 - 2981767 | 29717.6 |
| 5'-3' exonuclease | YT1_RS14890 | Not Available | Negative | 2981787 - 2982770 | 33049.8 |
| m24 family metallopeptidase | YT1_RS14895 | Not Available | Positive | 2982798 - 2983928 | 39636.1 |
| tigr03618 family f420-dependent ppox class oxidoreductase | YT1_RS14900 | Not Available | Negative | 2983935 - 2984333 | 14427.3 |
| sdr family nad(p)-dependent oxidoreductase | YT1_RS14905 | Not Available | Positive | 2984396 - 2985142 | 26322.0 |
| dihydrolipoyl dehydrogenase family protein | YT1_RS14910 | Not Available | Negative | 2985152 - 2986618 | 51003.7 |
| precorrin-3b synthase | YT1_RS14915 | Not Available | Negative | 2986680 - 2987504 | 28182.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


