Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| proteasome atpase | YT1_RS14820 | Not Available | Positive | 2965924 - 2967708 | 65245.4 |
| nitroreductase family deazaflavin-dependent oxidoreductase | YT1_RS14825 | Not Available | Positive | 2967782 - 2968204 | 15145.4 |
| depupylase/deamidase dop | YT1_RS14830 | Not Available | Positive | 2968215 - 2969708 | 54567.7 |
| ubiquitin-like protein pup | YT1_RS14835 | Not Available | Positive | 2969847 - 2970038 | 6798.55 |
| proteasome subunit beta | YT1_RS14840 | Not Available | Positive | 2970083 - 2970901 | 28341.6 |
| proteasome subunit alpha | YT1_RS14845 | Not Available | Positive | 2970898 - 2971716 | 28977.1 |
| bifunctional phosphatase pap2/diacylglycerol kinase family protein | YT1_RS14850 | Not Available | Negative | 2971704 - 2973176 | 51076.2 |
| pup--protein ligase | YT1_RS14855 | Not Available | Positive | 2973241 - 2974599 | 51254.8 |
| helix-turn-helix transcriptional regulator | YT1_RS14860 | Not Available | Positive | 2974680 - 2975720 | 37585.5 |
| helix-turn-helix transcriptional regulator | YT1_RS14865 | Not Available | Positive | 2975717 - 2976691 | 34439.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


