Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had family hydrolase | YT1_RS14770 | Not Available | Positive | 2956966 - 2957655 | 24147.8 |
| rhodanese-related sulfurtransferase | YT1_RS14775 | Not Available | Positive | 2957657 - 2958517 | 31136.0 |
| pseudouridine synthase | YT1_RS14780 | Not Available | Positive | 2958520 - 2959407 | 33818.8 |
| phosphoribosyl-atp diphosphatase | YT1_RS14785 | Not Available | Positive | 2959468 - 2959731 | 9651.47 |
| atp phosphoribosyltransferase | YT1_RS14790 | Not Available | Positive | 2959837 - 2960700 | 30941.0 |
| alpha/beta fold hydrolase | YT1_RS14795 | Not Available | Negative | 2960723 - 2962516 | 62002.9 |
| thioesterase family protein | YT1_RS14800 | Not Available | Negative | 2962613 - 2963428 | 29171.4 |
| recb family exonuclease | YT1_RS14805 | Not Available | Negative | 2963425 - 2964306 | 32752.8 |
| trna (adenine-n1)-methyltransferase | YT1_RS14810 | Not Available | Positive | 2964377 - 2965228 | 30526.5 |
| hypothetical protein | YT1_RS14815 | Not Available | Negative | 2965253 - 2965750 | 16515.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


