Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| universal stress protein | YT1_RS14720 | Not Available | Negative | 2941425 - 2941874 | 16194.4 |
| mfs transporter | YT1_RS14725 | Not Available | Negative | 2941887 - 2943458 | 52989.8 |
| tetr/acrr family transcriptional regulator | YT1_RS14730 | Not Available | Positive | 2943588 - 2944256 | 23936.5 |
| tn3 family transposase | YT1_RS14735 | Not Available | Negative | 2944280 - 2947294 | 111026.0 |
| duf4436 family protein | YT1_RS14740 | Not Available | Positive | 2947555 - 2948406 | 30625.5 |
| rieske (2fe-2s) protein | YT1_RS14745 | Not Available | Negative | 2948393 - 2948728 | 11836.0 |
| nitrite reductase large subunit nirb | YT1_RS14750 | Not Available | Negative | 2948725 - 2951232 | 89839.3 |
| mfs transporter | YT1_RS14755 | Not Available | Negative | 2951323 - 2952462 | 37948.2 |
| pac2 family protein | YT1_RS14760 | Not Available | Negative | 2952459 - 2953352 | 32521.0 |
| methionine synthase | YT1_RS14765 | Not Available | Positive | 2953404 - 2956973 | 129311.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


