Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| brex-2 system adenine-specific dna-methyltransferase pglx | YT1_RS14620 | Not Available | Positive | 2904334 - 2907921 | 133896.0 |
| duf3644 domain-containing protein | YT1_RS14625 | Not Available | Negative | 2908001 - 2909035 | 40091.3 |
| duf6079 family protein | YT1_RS14630 | Not Available | Positive | 2910213 - 2913920 | 136974.0 |
| brex-2 system phosphatase pglz | YT1_RS14635 | Not Available | Positive | 2913917 - 2916574 | 94092.5 |
| brex system atp-binding protein brxd | YT1_RS14640 | Not Available | Positive | 2916571 - 2917851 | 46649.8 |
| aaa family atpase | YT1_RS14645 | Not Available | Positive | 2917862 - 2921623 | 139178.0 |
| type ii toxin-antitoxin system hicb family antitoxin | YT1_RS14650 | Not Available | Negative | 2921644 - 2921979 | 12591.6 |
| dead/deah box helicase | YT1_RS14660 | Not Available | Positive | 2922343 - 2924448 | 76761.9 |
| hypothetical protein | YT1_RS14665 | Not Available | Negative | 2924961 - 2925272 | 11430.0 |
| hypothetical protein | YT1_RS27290 | Not Available | Positive | 2925433 - 2926185 | 27802.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


