Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS14520 | Not Available | Positive | 2885151 - 2885375 | 8249.16 |
| Trna-leu | Not Available | Not Available | Positive | 2885476 - 2885561 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 2885754 - 2885839 | Not Available |
| m20/m25/m40 family metallo-hydrolase | YT1_RS14535 | Not Available | Positive | 2885953 - 2887314 | 48828.9 |
| ybhb/ybcl family raf kinase inhibitor-like protein | YT1_RS14540 | Not Available | Positive | 2887344 - 2887877 | 18389.3 |
| quinone-dependent dihydroorotate dehydrogenase | YT1_RS14545 | Not Available | Negative | 2887986 - 2889056 | 37489.6 |
| duf5703 family protein | YT1_RS14550 | Not Available | Negative | 2889098 - 2889358 | 10023.0 |
| hypothetical protein | YT1_RS14555 | Not Available | Negative | 2889358 - 2890368 | 33052.1 |
| hypothetical protein | YT1_RS14560 | Not Available | Positive | 2890506 - 2890853 | 12520.8 |
| heme abc transporter atp-binding protein | YT1_RS14565 | Not Available | Negative | 2890806 - 2891693 | 30884.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


