Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | YT1_RS14320 | Not Available | Positive | 2842132 - 2842848 | 25057.6 |
| fe-s cluster assembly protein sufb | YT1_RS14325 | Not Available | Positive | 2842940 - 2844385 | 53022.7 |
| fe-s cluster assembly protein sufd | YT1_RS14330 | Not Available | Positive | 2844386 - 2845615 | 43338.8 |
| fe-s cluster assembly atpase sufc | YT1_RS14335 | Not Available | Positive | 2845659 - 2846456 | 28666.1 |
| cysteine desulfurase | YT1_RS14340 | Not Available | Positive | 2846471 - 2847724 | 44479.8 |
| fe-s cluster assembly sulfur transfer protein sufu | YT1_RS14345 | Not Available | Positive | 2847724 - 2848212 | 17284.3 |
| metal-sulfur cluster assembly factor | YT1_RS14350 | Not Available | Positive | 2848212 - 2848592 | 13772.0 |
| marr family winged helix-turn-helix transcriptional regulator | YT1_RS14355 | Not Available | Positive | 2848601 - 2849101 | 18225.9 |
| ku protein | YT1_RS14360 | Not Available | Negative | 2849146 - 2850120 | 35511.0 |
| lycopene cyclase family protein | YT1_RS14365 | Not Available | Negative | 2850173 - 2851297 | 39905.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


