Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucose-6-phosphate dehydrogenase | YT1_RS14270 | Not Available | Negative | 2830066 - 2831607 | 57204.9 |
| transaldolase | YT1_RS14275 | Not Available | Negative | 2831612 - 2832748 | 40342.5 |
| transketolase | YT1_RS14280 | Not Available | Negative | 2832754 - 2834856 | 74537.0 |
| heme o synthase | YT1_RS14285 | Not Available | Positive | 2835041 - 2836018 | 35216.9 |
| quinone oxidoreductase family protein | YT1_RS14290 | Not Available | Negative | 2836108 - 2837073 | 33385.7 |
| hypothetical protein | YT1_RS14295 | Not Available | Positive | 2837096 - 2837437 | 12079.5 |
| cox15/ctaa family protein | YT1_RS14300 | Not Available | Negative | 2837518 - 2838483 | 33548.9 |
| abc transporter permease | YT1_RS14305 | Not Available | Negative | 2838533 - 2839330 | 27111.3 |
| abc transporter atp-binding protein | YT1_RS14310 | Not Available | Negative | 2839327 - 2840271 | 33180.9 |
| polyprenol phosphomannose-dependent alpha 1,6 mannosyltransferase mptb | YT1_RS14315 | Not Available | Negative | 2840268 - 2842010 | 60219.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


