Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i glyceraldehyde-3-phosphate dehydrogenase | YT1_RS14220 | Not Available | Positive | 2818830 - 2819849 | 35814.7 |
| phosphoglycerate kinase | YT1_RS14225 | Not Available | Positive | 2819870 - 2821096 | 42256.3 |
| triose-phosphate isomerase | YT1_RS14230 | Not Available | Positive | 2821098 - 2821880 | 27114.7 |
| preprotein translocase subunit secg | YT1_RS14235 | Not Available | Positive | 2821954 - 2822187 | 8082.31 |
| phosphoenolpyruvate carboxylase | YT1_RS14240 | Not Available | Positive | 2822258 - 2825029 | 100713.0 |
| nuclear transport factor 2 family protein | YT1_RS14245 | Not Available | Positive | 2825147 - 2825557 | 14733.1 |
| alkyl/aryl-sulfatase | YT1_RS14250 | Not Available | Negative | 2825597 - 2827483 | 67696.0 |
| srpbcc domain-containing protein | YT1_RS14255 | Not Available | Negative | 2827573 - 2828055 | 18065.2 |
| 6-phosphogluconolactonase | YT1_RS14260 | Not Available | Negative | 2828401 - 2829168 | 26384.9 |
| glucose-6-phosphate dehydrogenase assembly protein opca | YT1_RS14265 | Not Available | Negative | 2829161 - 2830063 | 32410.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


