Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribulose-phosphate 3-epimerase | YT1_RS14170 | Not Available | Positive | 2808866 - 2809549 | 23946.5 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | YT1_RS14175 | Not Available | Positive | 2809546 - 2810589 | 35456.2 |
| riboflavin synthase | YT1_RS14180 | Not Available | Positive | 2810602 - 2811210 | 21038.9 |
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | YT1_RS14185 | Not Available | Positive | 2811271 - 2812521 | 45172.8 |
| 6,7-dimethyl-8-ribityllumazine synthase | YT1_RS14190 | Not Available | Positive | 2812522 - 2813004 | 16505.7 |
| ph domain-containing protein | YT1_RS14195 | Not Available | Positive | 2813001 - 2813474 | 16744.4 |
| excinuclease abc subunit uvrc | YT1_RS14200 | Not Available | Positive | 2813484 - 2815700 | 80503.9 |
| rnase adapter rapz | YT1_RS14205 | Not Available | Positive | 2815772 - 2816626 | 31095.0 |
| uridine diphosphate-n-acetylglucosamine-binding protein yvck | YT1_RS14210 | Not Available | Positive | 2816623 - 2817678 | 36426.6 |
| dna-binding protein whia | YT1_RS14215 | Not Available | Positive | 2817675 - 2818652 | 34652.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


