Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | YT1_RS14030 | Not Available | Positive | 2776314 - 2777552 | 45235.1 |
| hypothetical protein | YT1_RS14035 | Not Available | Negative | 2777670 - 2778227 | 19610.4 |
| hypothetical protein | YT1_RS27285 | Not Available | Negative | 2778364 - 2778507 | 5218.1 |
| tetr/acrr family transcriptional regulator | YT1_RS14040 | Not Available | Negative | 2778669 - 2779289 | 21879.2 |
| duf2236 domain-containing protein | YT1_RS14045 | Not Available | Positive | 2779400 - 2780284 | 33549.0 |
| patatin-like phospholipase family protein | YT1_RS14050 | Not Available | Negative | 2780306 - 2781526 | 43160.8 |
| b-4dmt family transporter | YT1_RS14055 | Not Available | Negative | 2781605 - 2782165 | 20163.9 |
| m24 family metallopeptidase | YT1_RS14060 | Not Available | Positive | 2782267 - 2783361 | 38231.3 |
| elongation factor p | YT1_RS14065 | Not Available | Positive | 2783397 - 2783960 | 20536.3 |
| transcription antitermination factor nusb | YT1_RS14070 | Not Available | Positive | 2783961 - 2784470 | 18253.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


