Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| quinone oxidoreductase family protein | YT1_RS13985 | Not Available | Negative | 2767881 - 2768855 | 34265.0 |
| arac family transcriptional regulator | YT1_RS13990 | Not Available | Positive | 2769138 - 2770223 | 40175.7 |
| ycii family protein | YT1_RS13995 | Not Available | Positive | 2770235 - 2770588 | 12527.0 |
| rna polymerase sigma factor | YT1_RS14000 | Not Available | Positive | 2770596 - 2771822 | 44089.2 |
| duf1622 domain-containing protein | YT1_RS14005 | Not Available | Negative | 2771815 - 2772189 | 13538.6 |
| prepilin peptidase | YT1_RS14010 | Not Available | Positive | 2772353 - 2772958 | 19239.1 |
| chorismate synthase | YT1_RS14015 | Not Available | Positive | 2773006 - 2774193 | 41279.4 |
| shikimate kinase | YT1_RS14020 | Not Available | Positive | 2774198 - 2774782 | 20844.9 |
| 3-dehydroquinate synthase | YT1_RS14025 | Not Available | Positive | 2774779 - 2775888 | 39003.1 |
| hypothetical protein | YT1_RS27280 | Not Available | Negative | 2775981 - 2776223 | 9195.85 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


