Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4177 domain-containing protein | YT1_RS13935 | Not Available | Positive | 2758094 - 2758291 | 7358.03 |
| glycoside hydrolase family 15 protein | YT1_RS13940 | Not Available | Positive | 2758377 - 2760155 | 66089.9 |
| carboxymuconolactone decarboxylase family protein | YT1_RS13945 | Not Available | Negative | 2760218 - 2760592 | 13644.3 |
| long-chain-fatty-acid--coa ligase | YT1_RS13950 | Not Available | Negative | 2760589 - 2762175 | 57138.7 |
| coa transferase subunit b | YT1_RS13955 | Not Available | Negative | 2762211 - 2762864 | 22477.3 |
| coa transferase subunit a | YT1_RS13960 | Not Available | Negative | 2762866 - 2763624 | 26484.5 |
| rbbp9/yden family alpha/beta hydrolase | YT1_RS13965 | Not Available | Negative | 2763696 - 2764283 | 21224.3 |
| mfs transporter | YT1_RS13970 | Not Available | Negative | 2764326 - 2765681 | 46831.9 |
| 3-keto-5-aminohexanoate cleavage protein | YT1_RS13975 | Not Available | Negative | 2765836 - 2766888 | 38881.5 |
| taud/tfda dioxygenase family protein | YT1_RS13980 | Not Available | Negative | 2766942 - 2767832 | 33473.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


