Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shoct domain-containing protein | YT1_RS13880 | Not Available | Positive | 2745714 - 2746016 | 10624.6 |
| cation-translocating p-type atpase | YT1_RS13885 | Not Available | Negative | 2746165 - 2748963 | 99023.7 |
| polyphosphate kinase 2 | YT1_RS13890 | Not Available | Negative | 2749007 - 2749894 | 34170.0 |
| mfs transporter | YT1_RS13895 | Not Available | Positive | 2749997 - 2751571 | 54704.1 |
| shoct domain-containing protein | YT1_RS13905 | Not Available | Positive | 2751961 - 2752377 | 15067.3 |
| three-helix bundle dimerization domain-containing protein | YT1_RS13910 | Not Available | Positive | 2752408 - 2752740 | 12173.6 |
| alpha/beta hydrolase | YT1_RS13915 | Not Available | Positive | 2752772 - 2754517 | 62978.5 |
| sulp family inorganic anion transporter | YT1_RS13920 | Not Available | Positive | 2754709 - 2756445 | 60078.7 |
| hypothetical protein | YT1_RS13925 | Not Available | Positive | 2756552 - 2757088 | 18754.3 |
| class ii glutamine amidotransferase | YT1_RS13930 | Not Available | Positive | 2757194 - 2758015 | 30294.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


