Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alkaline phosphatase family protein | YT1_RS13830 | Not Available | Negative | 2732637 - 2733911 | 44308.0 |
| alkaline phosphatase d family protein | YT1_RS13835 | Not Available | Negative | 2733908 - 2735551 | 58393.2 |
| replication-associated recombination protein a | YT1_RS13840 | Not Available | Positive | 2735701 - 2737110 | 49204.6 |
| cytochrome p450 | YT1_RS13845 | Not Available | Positive | 2737185 - 2738285 | 40090.7 |
| alanine--trna ligase | YT1_RS13850 | Not Available | Positive | 2738493 - 2741159 | 95229.0 |
| holliday junction resolvase ruvx | YT1_RS13855 | Not Available | Positive | 2741159 - 2741683 | 18529.1 |
| endolytic transglycosylase mltg | YT1_RS13860 | Not Available | Positive | 2741680 - 2743443 | 62886.9 |
| shikimate dehydrogenase | YT1_RS13865 | Not Available | Positive | 2743440 - 2744282 | 28541.1 |
| hypothetical protein | YT1_RS13870 | Not Available | Negative | 2744451 - 2744843 | 14202.6 |
| duf6325 family protein | YT1_RS13875 | Not Available | Positive | 2745208 - 2745657 | 15715.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


