Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gaf domain-containing protein | YT1_RS13785 | Not Available | Negative | 2721437 - 2723143 | 61056.1 |
| pyridoxamine 5'-phosphate oxidase family protein | YT1_RS13790 | Not Available | Positive | 2723355 - 2723777 | 14832.7 |
| response regulator | YT1_RS13795 | Not Available | Positive | 2723868 - 2724518 | 23373.4 |
| wax ester/triacylglycerol synthase family o-acyltransferase | YT1_RS13800 | Not Available | Positive | 2724562 - 2725968 | 50890.1 |
| hypothetical protein | YT1_RS27275 | Not Available | Positive | 2726089 - 2726250 | 5928.83 |
| lipase maturation factor family protein | YT1_RS13805 | Not Available | Negative | 2726413 - 2727852 | 54711.6 |
| neutral zinc metallopeptidase | YT1_RS13810 | Not Available | Negative | 2727941 - 2728855 | 31560.4 |
| aspartate--trna ligase | YT1_RS13815 | Not Available | Positive | 2729001 - 2730779 | 65054.4 |
| kinase | YT1_RS13820 | Not Available | Positive | 2730918 - 2732057 | 41412.0 |
| cbs domain-containing protein | YT1_RS13825 | Not Available | Negative | 2732125 - 2732550 | 15372.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


