Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| urea amidolyase associated protein uaap2 | YT1_RS13635 | Not Available | Positive | 2695129 - 2695785 | 23117.4 |
| 5-oxoprolinase/urea amidolyase family protein | YT1_RS13640 | Not Available | Positive | 2695782 - 2697752 | 70317.5 |
| rv2578c family radical sam protein | YT1_RS13645 | Not Available | Positive | 2697854 - 2698873 | 37245.9 |
| amino acid permease | YT1_RS13650 | Not Available | Negative | 2698875 - 2700284 | 49619.4 |
| atp-binding protein | YT1_RS13655 | Not Available | Negative | 2700545 - 2700970 | 15586.5 |
| stas domain-containing protein | YT1_RS13660 | Not Available | Negative | 2700960 - 2701298 | 11801.0 |
| glycosyltransferase | YT1_RS13665 | Not Available | Negative | 2701295 - 2703259 | 72286.2 |
| pp2c family protein-serine/threonine phosphatase | YT1_RS13670 | Not Available | Negative | 2703256 - 2704497 | 44630.6 |
| glycoside hydrolase family 26 protein | YT1_RS13675 | Not Available | Negative | 2704499 - 2705485 | 35387.2 |
| nad(p)/fad-dependent oxidoreductase | YT1_RS13680 | Not Available | Positive | 2705669 - 2707489 | 66982.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


