Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase subunit i | YT1_RS13585 | Not Available | Negative | 2685398 - 2687146 | 65228.2 |
| hsp20/alpha crystallin family protein | YT1_RS13590 | Not Available | Positive | 2687447 - 2687863 | 15452.4 |
| hypothetical protein | YT1_RS13595 | Not Available | Positive | 2687889 - 2688194 | 10708.0 |
| dnaj domain-containing protein | YT1_RS13600 | Not Available | Positive | 2688464 - 2688796 | 12352.5 |
| amidohydrolase | YT1_RS13605 | Not Available | Negative | 2688861 - 2690024 | 40800.4 |
| hypothetical protein | YT1_RS13610 | Not Available | Negative | 2690279 - 2691472 | 38188.2 |
| type vii secretion target | YT1_RS13615 | Not Available | Negative | 2691469 - 2691837 | 11712.7 |
| tetr/acrr family transcriptional regulator | YT1_RS13620 | Not Available | Negative | 2691873 - 2692550 | 24118.7 |
| amino acid permease | YT1_RS13625 | Not Available | Positive | 2692749 - 2694299 | 54134.8 |
| urea amidolyase associated protein uaap1 | YT1_RS13630 | Not Available | Positive | 2694296 - 2695126 | 28747.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


