Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa thioesterase | YT1_RS13480 | Not Available | Positive | 2665489 - 2666304 | 30521.0 |
| pyridoxal 5'-phosphate synthase glutaminase subunit pdxt | YT1_RS13485 | Not Available | Positive | 2666416 - 2667036 | 21736.2 |
| yebc/pmpr family dna-binding transcriptional regulator | YT1_RS13490 | Not Available | Positive | 2667101 - 2667853 | 26736.1 |
| crossover junction endodeoxyribonuclease ruvc | YT1_RS13495 | Not Available | Positive | 2667955 - 2668533 | 20242.6 |
| holliday junction branch migration protein ruva | YT1_RS13500 | Not Available | Positive | 2668530 - 2669123 | 20528.8 |
| holliday junction branch migration dna helicase ruvb | YT1_RS13505 | Not Available | Positive | 2669120 - 2670214 | 38710.5 |
| preprotein translocase subunit yajc | YT1_RS13510 | Not Available | Positive | 2670332 - 2670670 | 12149.7 |
| protein translocase subunit secd | YT1_RS13520 | Not Available | Positive | 2670870 - 2672609 | 59675.9 |
| protein translocase subunit secf | YT1_RS13525 | Not Available | Positive | 2672612 - 2673814 | 42502.8 |
| abc transporter substrate-binding protein | YT1_RS13530 | Not Available | Positive | 2673816 - 2675570 | 60165.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


