Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is3 family transposase | YT1_RS02090 | Not Available | Positive | 228021 - 229246 | 46725.6 |
| atp-binding protein | YT1_RS02095 | Not Available | Negative | 229535 - 230929 | 49753.3 |
| winged helix-turn-helix domain-containing protein | YT1_RS27560 | Not Available | Negative | 230926 - 231333 | 14973.0 |
| hypothetical protein | YT1_RS02105 | Not Available | Positive | 231737 - 232012 | 9526.96 |
| hypothetical protein | YT1_RS27070 | Not Available | Positive | 231996 - 232292 | 9377.02 |
| fad:protein fmn transferase | YT1_RS02110 | Not Available | Positive | 232360 - 233256 | 31359.2 |
| 2fe-2s iron-sulfur cluster-binding protein | YT1_RS02115 | Not Available | Positive | 233504 - 234745 | 45121.2 |
| hypothetical protein | YT1_RS27565 | Not Available | Negative | 234946 - 235089 | 4995.66 |
| shoct domain-containing protein | YT1_RS02130 | Not Available | Positive | 236206 - 236451 | 9249.35 |
| multicopper oxidase family protein | YT1_RS02135 | Not Available | Positive | 236506 - 238035 | 54285.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


