Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class i sam-dependent rna methyltransferase | YT1_RS13280 | Not Available | Positive | 2624532 - 2625800 | 44863.0 |
| marr family winged helix-turn-helix transcriptional regulator | YT1_RS13285 | Not Available | Positive | 2625938 - 2626396 | 16776.9 |
| mdr family mfs transporter | YT1_RS13290 | Not Available | Positive | 2626456 - 2627988 | 52675.6 |
| abc transporter permease | YT1_RS13295 | Not Available | Negative | 2627989 - 2628828 | 30007.3 |
| daunorubicin resistance protein drra family abc transporter atp-binding protein | YT1_RS13300 | Not Available | Negative | 2628825 - 2629799 | 33531.0 |
| 1-deoxy-d-xylulose-5-phosphate synthase | YT1_RS13305 | Not Available | Positive | 2630085 - 2632058 | 69495.0 |
| sugar porter family mfs transporter | YT1_RS13310 | Not Available | Negative | 2632108 - 2633547 | 50584.0 |
| 3-hydroxyacyl-coa dehydrogenase nad-binding domain-containing protein | YT1_RS13315 | Not Available | Negative | 2633687 - 2635792 | 74033.9 |
| thiolase family protein | YT1_RS13320 | Not Available | Negative | 2635795 - 2637003 | 42228.4 |
| ribonuclease d | YT1_RS13325 | Not Available | Negative | 2637359 - 2638597 | 44812.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


