Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4193 domain-containing protein | YT1_RS13230 | Not Available | Positive | 2616755 - 2617057 | 11012.5 |
| duf3093 domain-containing protein | YT1_RS13235 | Not Available | Negative | 2617143 - 2617652 | 18580.6 |
| dutp diphosphatase | YT1_RS13240 | Not Available | Positive | 2617672 - 2618142 | 16052.3 |
| duf3710 domain-containing protein | YT1_RS13245 | Not Available | Positive | 2618144 - 2618980 | 29373.5 |
| alpha/beta fold hydrolase | YT1_RS13250 | Not Available | Negative | 2618993 - 2619721 | 24658.3 |
| helix-turn-helix transcriptional regulator | YT1_RS13255 | Not Available | Positive | 2619857 - 2620233 | 13075.2 |
| duf3159 domain-containing protein | YT1_RS13260 | Not Available | Positive | 2620304 - 2620981 | 24276.6 |
| potassium channel family protein | YT1_RS13265 | Not Available | Negative | 2620986 - 2621639 | 23420.3 |
| potassium channel family protein | YT1_RS13270 | Not Available | Negative | 2621701 - 2622366 | 23735.1 |
| apc family permease | YT1_RS13275 | Not Available | Positive | 2622544 - 2624535 | 72105.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


