Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yihy/virulence factor brkb family protein | YT1_RS13180 | Not Available | Negative | 2606582 - 2607757 | 42637.8 |
| dead/deah box helicase | YT1_RS13185 | Not Available | Positive | 2608011 - 2609735 | 62192.1 |
| hypothetical protein | YT1_RS13190 | Not Available | Negative | 2609839 - 2610033 | 6719.97 |
| duf952 domain-containing protein | YT1_RS13195 | Not Available | Positive | 2610289 - 2610633 | 12509.8 |
| cation:proton antiporter regulatory subunit | YT1_RS13200 | Not Available | Positive | 2610679 - 2611161 | 16690.0 |
| cation:proton antiporter | YT1_RS13205 | Not Available | Positive | 2611165 - 2612385 | 41756.8 |
| rna polymerase sigma factor | YT1_RS13210 | Not Available | Negative | 2612394 - 2613752 | 49780.7 |
| polyphosphate--glucose phosphotransferase | YT1_RS13215 | Not Available | Negative | 2613887 - 2614672 | 27188.5 |
| inositol monophosphatase family protein | YT1_RS13220 | Not Available | Positive | 2614795 - 2615691 | 30616.1 |
| envelope integrity protein cei | YT1_RS13225 | Not Available | Negative | 2615705 - 2616388 | 23658.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


