Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS13130 | Not Available | Positive | 2595091 - 2595849 | 25717.5 |
| duf4192 domain-containing protein | YT1_RS13135 | Not Available | Positive | 2596014 - 2597147 | 39511.3 |
| udp-glucose 4-epimerase gale | YT1_RS13140 | Not Available | Negative | 2597158 - 2598150 | 35081.3 |
| metal-dependent transcriptional regulator | YT1_RS13145 | Not Available | Negative | 2598203 - 2598889 | 25520.6 |
| acetoin utilization protein acuc | YT1_RS13150 | Not Available | Positive | 2599040 - 2600311 | 44733.9 |
| bifunctional gnat family n-acetyltransferase/acetate--coa ligase family protein | YT1_RS13155 | Not Available | Positive | 2600511 - 2603129 | 92168.1 |
| sigma-70 family rna polymerase sigma factor | YT1_RS13160 | Not Available | Negative | 2603264 - 2604226 | 35756.8 |
| methyltransferase | YT1_RS13165 | Not Available | Negative | 2604408 - 2605889 | 53044.9 |
| duf3099 domain-containing protein | YT1_RS13170 | Not Available | Negative | 2605941 - 2606300 | 13096.7 |
| duf3039 domain-containing protein | YT1_RS13175 | Not Available | Positive | 2606373 - 2606609 | 8632.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


