Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deor/glpr family dna-binding transcription regulator | YT1_RS13030 | Not Available | Negative | 2570632 - 2571399 | 27074.4 |
| phosphoenolpyruvate--protein phosphotransferase | YT1_RS13035 | Not Available | Positive | 2571538 - 2573223 | 57750.0 |
| uracil-xanthine permease family protein | YT1_RS13040 | Not Available | Positive | 2573288 - 2574598 | 44015.5 |
| acyl-coa dehydrogenase family protein | YT1_RS13045 | Not Available | Positive | 2574679 - 2575821 | 42385.7 |
| transcriptional repressor lexa | YT1_RS13050 | Not Available | Negative | 2575895 - 2576608 | 25458.5 |
| lysm peptidoglycan-binding domain-containing protein | YT1_RS13055 | Not Available | Positive | 2576866 - 2577384 | 18299.0 |
| transcriptional regulator nrdr | YT1_RS13060 | Not Available | Positive | 2577577 - 2578050 | 17709.8 |
| atp-dependent rna helicase hrpa | YT1_RS13065 | Not Available | Negative | 2578075 - 2581995 | 145903.0 |
| aspartate aminotransferase family protein | YT1_RS13070 | Not Available | Positive | 2582054 - 2583316 | 44632.8 |
| hypothetical protein | YT1_RS13075 | Not Available | Negative | 2583355 - 2583618 | 9760.89 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


