Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS12980 | Not Available | Positive | 2559952 - 2560491 | 19015.2 |
| duf349 domain-containing protein | YT1_RS12985 | Not Available | Negative | 2560627 - 2561985 | 49785.5 |
| hypothetical protein | YT1_RS12990 | Not Available | Positive | 2562137 - 2562853 | 23995.6 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | YT1_RS12995 | Not Available | Positive | 2562841 - 2563776 | 33948.6 |
| diaminopimelate epimerase | YT1_RS13000 | Not Available | Positive | 2563786 - 2564652 | 29845.2 |
| gtpase hflx | YT1_RS13005 | Not Available | Positive | 2564751 - 2566199 | 52345.7 |
| hypothetical protein | YT1_RS13010 | Not Available | Positive | 2566199 - 2567248 | 34719.2 |
| hpr family phosphocarrier protein | YT1_RS13015 | Not Available | Negative | 2567251 - 2567508 | 8227.78 |
| fructose-specific pts transporter subunit eiic | YT1_RS13020 | Not Available | Negative | 2567561 - 2569609 | 67861.9 |
| 1-phosphofructokinase | YT1_RS13025 | Not Available | Negative | 2569619 - 2570635 | 33715.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


