Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS27270 | Not Available | Positive | 2550236 - 2550412 | 5969.29 |
| glycosyltransferase | YT1_RS12935 | Not Available | Positive | 2550417 - 2551571 | 39082.4 |
| duf3046 domain-containing protein | YT1_RS12940 | Not Available | Positive | 2551655 - 2551849 | 7364.7 |
| intein-containing recombinase reca | YT1_RS12945 | Not Available | Positive | 2552033 - 2554165 | 77653.8 |
| recombination regulator recx | YT1_RS12950 | Not Available | Positive | 2554174 - 2554752 | 21216.1 |
| amino acid abc transporter permease | YT1_RS12955 | Not Available | Negative | 2554757 - 2555686 | 33247.1 |
| amino acid abc transporter permease | YT1_RS12960 | Not Available | Negative | 2555683 - 2556363 | 23981.9 |
| glutamate abc transporter substrate-binding protein | YT1_RS12965 | Not Available | Negative | 2556447 - 2557280 | 29380.3 |
| amino acid abc transporter atp-binding protein | YT1_RS12970 | Not Available | Negative | 2557333 - 2558061 | 26307.2 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | YT1_RS12975 | Not Available | Positive | 2558336 - 2559886 | 56257.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


