Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class i sam-dependent methyltransferase | YT1_RS02035 | Not Available | Negative | 217423 - 218133 | 26633.1 |
| f510_1955 family glycosylhydrolase | YT1_RS02040 | Not Available | Positive | 219005 - 219835 | 27554.0 |
| duf305 domain-containing protein | YT1_RS02045 | Not Available | Negative | 219931 - 220632 | 24260.6 |
| response regulator transcription factor | YT1_RS02055 | Not Available | Positive | 221495 - 222196 | 25364.4 |
| sensor histidine kinase | YT1_RS02060 | Not Available | Positive | 222193 - 223389 | 42091.9 |
| cupin domain-containing protein | YT1_RS02065 | Not Available | Positive | 223386 - 223715 | 11711.0 |
| abc transporter permease | YT1_RS02070 | Not Available | Negative | 223728 - 225272 | 53052.2 |
| atp-binding cassette domain-containing protein | YT1_RS02075 | Not Available | Negative | 225269 - 225952 | 25188.2 |
| inorganic phosphate transporter | YT1_RS02080 | Not Available | Positive | 226446 - 227450 | 33689.5 |
| hypothetical protein | YT1_RS02085 | Not Available | Positive | 227501 - 228055 | 19995.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


