Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS12790 | Not Available | Positive | 2520543 - 2521019 | 17784.5 |
| helix-turn-helix transcriptional regulator | YT1_RS12795 | Not Available | Positive | 2521177 - 2521658 | 16643.4 |
| srpbcc family protein | YT1_RS12800 | Not Available | Negative | 2521682 - 2522119 | 16199.3 |
| toxin-antitoxin system hicb family antitoxin | YT1_RS12805 | Not Available | Negative | 2522180 - 2522698 | 18382.3 |
| fad-dependent thymidylate synthase | YT1_RS12810 | Not Available | Positive | 2522815 - 2523570 | 27572.6 |
| 4-hydroxy-tetrahydrodipicolinate synthase | YT1_RS12815 | Not Available | Positive | 2523620 - 2524528 | 31334.8 |
| ribonuclease j | YT1_RS12820 | Not Available | Positive | 2524525 - 2526342 | 65085.2 |
| tigr03085 family metal-binding protein | YT1_RS12825 | Not Available | Positive | 2526403 - 2527026 | 22898.3 |
| ftsk/spoiiie family dna translocase | YT1_RS12830 | Not Available | Positive | 2527109 - 2529775 | 94444.6 |
| terc family protein | YT1_RS12835 | Not Available | Positive | 2529983 - 2530969 | 36322.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


