Rhodococcus ruber strain YC-YT1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YC-YT1 is a Gram-positive bacterium predominantly found in soil environments. This strain is characterized by the presence of flagella, which may contribute to its motility and ability to adapt to various soil conditions. Notably, it possesses a single replicon, which is indicative of its genomic organization. The genomic information for this strain is cataloged under the accession number NZ_CP023714.1. Rhodococcus species, including R. ruber, are known for their metabolic versatility, allowing them to degrade a wide range of organic compounds. This adaptability makes them important in bioremediation processes, where they can break down pollutants in contaminated soils. The ability to thrive in diverse soil habitats suggests that R. ruber strain YC-YT1 may play a significant role in soil ecology, potentially influencing nutrient cycling and the degradation of organic materials. Overall, the traits of Rhodococcus ruber strain YC-YT1 highlight its ecological importance and potential applications in environmental microbiology, particularly in the context of soil health and bioremediation efforts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YC-YT1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YC-YT1 chromosome, complete genome.

Gene Summary

Adenine Count

838143 bp

Thymine Count

839814 bp

Guanine Count

1998922 bp

Cytosine Count

1992973 bp

Genome Length

5669852 bp

Protein-coding Genes

5139 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
luxr c-terminal-related transcriptional regulatorYT1_RS12745Not AvailableNegative2506605 - 250933197799.0
hypothetical proteinYT1_RS27260Not AvailableNegative2509423 - 25096116673.74
hypothetical proteinYT1_RS12750Not AvailableNegative2509657 - 25098967745.32
nitrate/nitrite transporterYT1_RS12755Not AvailablePositive2510193 - 251138941300.6
nitrate reductase subunit alphaYT1_RS12760Not AvailablePositive2511414 - 2515130136482.0
nitrate reductase subunit betaYT1_RS12765Not AvailablePositive2515171 - 251684762590.4
nitrate reductase molybdenum cofactor assembly chaperoneYT1_RS12770Not AvailablePositive2516844 - 251753924942.7
respiratory nitrate reductase subunit gammaYT1_RS12775Not AvailablePositive2517542 - 251827327260.7
m16 family metallopeptidaseYT1_RS12780Not AvailablePositive2518358 - 251970748011.8
4-hydroxy-tetrahydrodipicolinate reductaseYT1_RS12785Not AvailablePositive2519791 - 252054626121.3

Displaying genes 2361 – 2370 of 5228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.