Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcription termination factor nusa | YT1_RS12645 | Not Available | Positive | 2485441 - 2486469 | 36798.6 |
| ylxr family protein | YT1_RS12650 | Not Available | Positive | 2486514 - 2486834 | 11494.9 |
| translation initiation factor if-2 | YT1_RS12655 | Not Available | Positive | 2486985 - 2489885 | 100081.0 |
| duf503 domain-containing protein | YT1_RS12660 | Not Available | Positive | 2489990 - 2490280 | 10753.1 |
| 30s ribosome-binding factor rbfa | YT1_RS12665 | Not Available | Positive | 2490340 - 2490849 | 18147.1 |
| dhh family phosphoesterase | YT1_RS12670 | Not Available | Positive | 2490857 - 2491840 | 34294.8 |
| mate family efflux transporter | YT1_RS12675 | Not Available | Positive | 2491843 - 2493261 | 48798.8 |
| metallophosphoesterase family protein | YT1_RS12680 | Not Available | Positive | 2493258 - 2494223 | 36974.2 |
| 4'-phosphopantetheinyl transferase npt | YT1_RS12685 | Not Available | Positive | 2494220 - 2494924 | 25186.2 |
| trna pseudouridine(55) synthase trub | YT1_RS12690 | Not Available | Positive | 2494956 - 2495873 | 31707.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


