Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| long-chain-fatty-acid--coa ligase | YT1_RS12595 | Not Available | Positive | 2474640 - 2476322 | 60265.5 |
| uroporphyrinogen-iii c-methyltransferase | YT1_RS12600 | Not Available | Positive | 2476472 - 2477722 | 43259.0 |
| mfs transporter | YT1_RS12605 | Not Available | Positive | 2477734 - 2479215 | 49926.1 |
| fusc family protein | YT1_RS12610 | Not Available | Positive | 2479375 - 2480508 | 40336.4 |
| peroxide stress protein yaaa | YT1_RS12615 | Not Available | Negative | 2480479 - 2481222 | 25759.9 |
| proline--trna ligase | YT1_RS12620 | Not Available | Positive | 2481276 - 2483009 | 63139.8 |
| o-methyltransferase | YT1_RS12625 | Not Available | Positive | 2483037 - 2483711 | 23836.3 |
| ferritin-like domain-containing protein | YT1_RS12630 | Not Available | Negative | 2483730 - 2484176 | 15276.9 |
| hypothetical protein | YT1_RS12635 | Not Available | Negative | 2484173 - 2484673 | 16713.9 |
| ribosome maturation factor rimp | YT1_RS12640 | Not Available | Positive | 2484836 - 2485444 | 21895.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


