Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | YT1_RS12545 | Not Available | Positive | 2462081 - 2463235 | 40188.6 |
| gnat family n-acetyltransferase | YT1_RS12550 | Not Available | Positive | 2463320 - 2464156 | 29870.9 |
| penicillin-binding transpeptidase domain-containing protein | YT1_RS12555 | Not Available | Positive | 2464224 - 2466065 | 64025.5 |
| helix-turn-helix transcriptional regulator | YT1_RS12560 | Not Available | Negative | 2466106 - 2466966 | 30244.4 |
| amp-binding protein | YT1_RS12565 | Not Available | Positive | 2467073 - 2468731 | 58835.5 |
| type i methionyl aminopeptidase | YT1_RS12570 | Not Available | Positive | 2468802 - 2469659 | 31087.9 |
| hypothetical protein | YT1_RS12575 | Not Available | Positive | 2469708 - 2470274 | 19489.1 |
| mycothione reductase | YT1_RS12580 | Not Available | Negative | 2470333 - 2471706 | 49074.1 |
| alpha/beta hydrolase | YT1_RS12585 | Not Available | Negative | 2471738 - 2472745 | 36920.8 |
| malate dehydrogenase (quinone) | YT1_RS12590 | Not Available | Positive | 2472980 - 2474509 | 54472.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


