Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yifb family mg chelatase-like aaa atpase | YT1_RS12445 | Not Available | Positive | 2443028 - 2444536 | 52515.5 |
| dna-processing protein dpra | YT1_RS12450 | Not Available | Positive | 2444533 - 2445660 | 38751.1 |
| hypothetical protein | YT1_RS12455 | Not Available | Negative | 2445664 - 2445900 | 8785.44 |
| siderophore-interacting protein | YT1_RS12460 | Not Available | Positive | 2446036 - 2446830 | 28003.8 |
| multidrug effflux mfs transporter | YT1_RS12465 | Not Available | Negative | 2446837 - 2447997 | 39540.6 |
| tyrosine recombinase xerc | YT1_RS12470 | Not Available | Positive | 2448095 - 2449021 | 32983.4 |
| mind/para family protein | YT1_RS12475 | Not Available | Positive | 2449331 - 2450773 | 50472.1 |
| m23 family metallopeptidase | YT1_RS12480 | Not Available | Negative | 2450728 - 2451276 | 18700.5 |
| 30s ribosomal protein s2 | YT1_RS12485 | Not Available | Positive | 2451598 - 2452431 | 30300.2 |
| translation elongation factor ts | YT1_RS12490 | Not Available | Positive | 2452591 - 2453415 | 29143.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


