Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (guanosine(37)-n1)-methyltransferase trmd | YT1_RS12395 | Not Available | Positive | 2433434 - 2434135 | 25520.5 |
| is110 family transposase | YT1_RS12400 | Not Available | Positive | 2434388 - 2435611 | 44215.9 |
| hypothetical protein | YT1_RS12405 | Not Available | Negative | 2435643 - 2436599 | 33407.0 |
| tex family protein | YT1_RS12410 | Not Available | Positive | 2436712 - 2439057 | 84254.1 |
| hypothetical protein | YT1_RS12415 | Not Available | Positive | 2439204 - 2440109 | 32970.6 |
| 50s ribosomal protein l19 | YT1_RS12420 | Not Available | Positive | 2440195 - 2440536 | 12909.8 |
| signal peptidase i | YT1_RS12425 | Not Available | Positive | 2440645 - 2441403 | 27764.0 |
| ribonuclease hii | YT1_RS12430 | Not Available | Positive | 2441400 - 2442098 | 24442.7 |
| duf2469 domain-containing protein | YT1_RS12435 | Not Available | Positive | 2442136 - 2442450 | 12440.8 |
| yran family protein | YT1_RS12440 | Not Available | Positive | 2442672 - 2443028 | 13119.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


