Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal recognition particle-docking protein ftsy | YT1_RS12345 | Not Available | Positive | 2422216 - 2423823 | 55494.3 |
| ammonium transporter | YT1_RS12350 | Not Available | Positive | 2424281 - 2425588 | 45099.9 |
| p-ii family nitrogen regulator | YT1_RS12355 | Not Available | Positive | 2425632 - 2425970 | 12103.6 |
| [protein-pii] uridylyltransferase | YT1_RS12360 | Not Available | Positive | 2425960 - 2428473 | 89290.0 |
| signal recognition particle protein | YT1_RS12365 | Not Available | Positive | 2428576 - 2430156 | 55530.8 |
| amidohydrolase family protein | YT1_RS12370 | Not Available | Positive | 2430163 - 2431257 | 38102.0 |
| cpbp family intramembrane glutamic endopeptidase | YT1_RS12375 | Not Available | Positive | 2431254 - 2432000 | 26170.5 |
| 30s ribosomal protein s16 | YT1_RS12380 | Not Available | Positive | 2432177 - 2432617 | 16094.2 |
| rna-binding protein | YT1_RS12385 | Not Available | Positive | 2432617 - 2432859 | 8449.18 |
| ribosome maturation factor rimm | YT1_RS12390 | Not Available | Positive | 2432870 - 2433427 | 19908.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


