Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | YT1_RS12295 | Not Available | Negative | 2411299 - 2412213 | 33043.3 |
| tetr/acrr family transcriptional regulator | YT1_RS12300 | Not Available | Negative | 2412245 - 2412949 | 25233.9 |
| cation:proton antiporter | YT1_RS12305 | Not Available | Negative | 2413026 - 2414264 | 43910.2 |
| protocatechuate 3,4-dioxygenase subunit alpha | YT1_RS12310 | Not Available | Negative | 2414370 - 2415050 | 24694.7 |
| protocatechuate 3,4-dioxygenase subunit beta | YT1_RS12315 | Not Available | Negative | 2415047 - 2415799 | 27960.2 |
| lysr substrate-binding domain-containing protein | YT1_RS12320 | Not Available | Positive | 2415914 - 2416861 | 33125.1 |
| osmc family protein | YT1_RS12325 | Not Available | Positive | 2416881 - 2417318 | 15863.7 |
| smp-30/gluconolactonase/lre family protein | YT1_RS12330 | Not Available | Positive | 2417345 - 2418271 | 30612.1 |
| acylphosphatase | YT1_RS12335 | Not Available | Positive | 2418271 - 2418558 | 10445.4 |
| chromosome segregation protein smc | YT1_RS12340 | Not Available | Positive | 2418584 - 2422219 | 130774.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


