Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dak2 domain-containing protein | YT1_RS12200 | Not Available | Positive | 2388471 - 2390108 | 56097.4 |
| atp-dependent dna helicase recg | YT1_RS12205 | Not Available | Positive | 2390168 - 2392471 | 82842.3 |
| pyruvate carboxylase | YT1_RS12210 | Not Available | Positive | 2392656 - 2396057 | 121335.0 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | YT1_RS12215 | Not Available | Positive | 2396014 - 2396646 | 22353.8 |
| pantetheine-phosphate adenylyltransferase | YT1_RS12220 | Not Available | Positive | 2396643 - 2397137 | 17837.4 |
| diviva domain-containing protein | YT1_RS12225 | Not Available | Positive | 2397305 - 2398066 | 27787.8 |
| yced family protein | YT1_RS12230 | Not Available | Positive | 2398184 - 2398798 | 21966.8 |
| 50s ribosomal protein l32 | YT1_RS12235 | Not Available | Positive | 2398801 - 2398983 | 6589.96 |
| ribonuclease iii | YT1_RS12240 | Not Available | Positive | 2399004 - 2399765 | 26351.1 |
| bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase | YT1_RS12245 | Not Available | Positive | 2399772 - 2400641 | 31625.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


