Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4233 domain-containing protein | YT1_RS12100 | Not Available | Positive | 2367672 - 2368097 | 14919.6 |
| nucleoside-diphosphate kinase | YT1_RS12105 | Not Available | Positive | 2368114 - 2368533 | 14848.8 |
| translation initiation factor if-2 n-terminal domain-containing protein | YT1_RS12110 | Not Available | Positive | 2368923 - 2372150 | 114438.0 |
| 50s ribosomal protein l21 | YT1_RS12115 | Not Available | Positive | 2372353 - 2372664 | 11163.7 |
| 50s ribosomal protein l27 | YT1_RS12120 | Not Available | Positive | 2372701 - 2372964 | 9012.75 |
| gtpase obge | YT1_RS12125 | Not Available | Positive | 2373165 - 2374619 | 50969.2 |
| glutamate 5-kinase | YT1_RS12130 | Not Available | Positive | 2374646 - 2375746 | 37961.3 |
| nad-dependent protein deacetylase | YT1_RS12135 | Not Available | Negative | 2375757 - 2376590 | 29923.9 |
| d-isomer specific 2-hydroxyacid dehydrogenase family protein | YT1_RS12140 | Not Available | Negative | 2376612 - 2377547 | 32257.5 |
| ectoine synthase | YT1_RS12145 | Not Available | Negative | 2377597 - 2377992 | 14749.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


