Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| whib family transcriptional regulator | YT1_RS12050 | Not Available | Positive | 2354757 - 2354996 | 9067.87 |
| helix-turn-helix transcriptional regulator | YT1_RS12055 | Not Available | Negative | 2355038 - 2357048 | 70777.8 |
| nad(p)/fad-dependent oxidoreductase | YT1_RS12060 | Not Available | Negative | 2357146 - 2358336 | 41663.4 |
| gnat family n-acetyltransferase | YT1_RS12065 | Not Available | Positive | 2358486 - 2359100 | 22530.9 |
| toxin-antitoxin system ywqk family antitoxin | YT1_RS12070 | Not Available | Positive | 2359226 - 2359642 | 15361.6 |
| maleylpyruvate isomerase n-terminal domain-containing protein | YT1_RS12075 | Not Available | Positive | 2359660 - 2360286 | 22766.3 |
| alpha/beta hydrolase family protein | YT1_RS12080 | Not Available | Positive | 2360455 - 2362458 | 72429.2 |
| tigr03621 family f420-dependent llm class oxidoreductase | YT1_RS12085 | Not Available | Negative | 2362518 - 2363468 | 34171.9 |
| valine--trna ligase | YT1_RS12090 | Not Available | Positive | 2363570 - 2366245 | 99225.0 |
| bifunctional tetrahydrofolate synthase/dihydrofolate synthase | YT1_RS12095 | Not Available | Positive | 2366242 - 2367675 | 49976.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


