Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein glxc | YT1_RS12000 | Not Available | Negative | 2345336 - 2346022 | 23563.0 |
| glutamine amidotransferase | YT1_RS12005 | Not Available | Negative | 2346124 - 2347011 | 30401.2 |
| type iii glutamate--ammonia ligase | YT1_RS12010 | Not Available | Negative | 2347068 - 2348444 | 48934.5 |
| cupin domain-containing protein | YT1_RS12015 | Not Available | Positive | 2348746 - 2349123 | 14100.6 |
| 50s ribosomal protein l32 | YT1_RS12020 | Not Available | Positive | 2349134 - 2349646 | 18316.4 |
| pdr/vanb family oxidoreductase | YT1_RS12025 | Not Available | Positive | 2349646 - 2350641 | 35559.2 |
| heme-dependent oxidative n-demethylase family protein | YT1_RS12030 | Not Available | Positive | 2350638 - 2351645 | 38345.9 |
| dimethylamine monooxygenase subunit dmma family protein | YT1_RS12035 | Not Available | Positive | 2351642 - 2352118 | 15987.3 |
| heme-dependent oxidative n-demethylase family protein | YT1_RS12040 | Not Available | Positive | 2352141 - 2353148 | 38479.2 |
| lycopene cyclase family protein | YT1_RS12045 | Not Available | Positive | 2353219 - 2354379 | 41841.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


