Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | YT1_RS11950 | Not Available | Negative | 2333255 - 2334598 | 47238.8 |
| tetr family transcriptional regulator | YT1_RS11955 | Not Available | Negative | 2334765 - 2335415 | 24486.9 |
| shikimate dehydrogenase | YT1_RS11960 | Not Available | Positive | 2335517 - 2336389 | 30415.8 |
| tetr/acrr family transcriptional regulator | YT1_RS11965 | Not Available | Negative | 2336421 - 2337062 | 23479.0 |
| alpha/beta hydrolase family protein | YT1_RS11970 | Not Available | Positive | 2337126 - 2338301 | 39856.4 |
| formate dehydrogenase accessory sulfurtransferase fdhd | YT1_RS11975 | Not Available | Negative | 2338318 - 2339130 | 28406.1 |
| fdhf/ydep family oxidoreductase | YT1_RS11980 | Not Available | Negative | 2339130 - 2341439 | 84395.1 |
| ammonium transporter | YT1_RS11985 | Not Available | Positive | 2341678 - 2343030 | 45577.1 |
| helix-turn-helix domain-containing protein | YT1_RS11990 | Not Available | Negative | 2343194 - 2343841 | 23264.9 |
| fmn-binding glutamate synthase family protein | YT1_RS11995 | Not Available | Negative | 2343976 - 2345301 | 47215.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


